Publications by Current and Former Trainees

  • Zhang Y, Bharathi V, Dokoshi T, de Anda J, Ursery LT, Kulkarni NN, Nakamura Y, Chen J, Luo EWC, Wang L, Xu H, Coady A, Zurich R, Lee MW, Matsui T, Lee H, Chan LC, Schepmoes AA, Lipton MS, Zhao R, Adkins JN, Clair GC, Thurlow LR, Schisler JC, Wolfgang MC, Hagan RS, Yeaman MR, Weiss TM, Li MMH, et al. Viral afterlife: SARS-CoV-2 as a reservoir of immunomimetic peptides that reassemble into proinflammatory supramolecular complexes. Proc Natl Acad Sci U S A. 2024 Feb 6;121(6):e2300644120. doi: 10.1073/pnas.2300644120. Epub 2024 Feb 2. PMID: 38306481; PMCID: PMC10861912.
  • Falasinnu T, Nguyen T, Jiang TE, Tamang S, Chaichian Y, Darnall BD, Mackey S, Simard JF, Chen JH. The Problem of Pain in Rheumatology: Variations in Case Definitions Derived From Chronic Pain Phenotyping Algorithms Using Electronic Health Records. J Rheumatol. 2024 Mar 1;51(3):297-304. doi: 10.3899/jrheum.2023-0416. PMID: 38101917; PMCID: PMC10922235.
  • Goh E, Gallo R, Hom J, Strong E, Weng Y, Kerman H, Cool J, Kanjee Z, Parsons AS, Ahuja N, Horvitz E, Yang D, Milstein A, Olson APJ, Rodman A, Chen JH. Influence of a Large Language Model on Diagnostic Reasoning: A Randomized Clinical Vignette Study. medRxiv. 2024 Mar 14:10.1101/2024.03.12.24303785. doi: 10.1101/2024.03.12.24303785. PMID: 38559045; PMCID: PMC10980135.
  • Chen JM, Ittenbach RF, Lawrence KM, Hunt ML, Kaplinski M, Mahle M, Fuller S, Maeda K, Nuri MAK, Gardner MM, Mavroudis CD, Mascio CE, Spray TL, Gaynor JW. Increased utilization of the hybrid procedure is not associated with improved early survival for newborns with hypoplastic left heart syndrome: a single-centre experience. Eur J Cardiothorac Surg. 2024 Mar 29;65(4):10.1093/ejcts/ezae164. doi: 10.1093/ejcts/ezae164. PMID: 38608188.
  • Gallo RJ, Savage T, Chen JH. Affiliation Bias in Peer Review of Abstracts. JAMA. 2024 Apr 9;331(14):1234-1235. doi: 10.1001/jama.2024.3520. PMID: 38592392.
  • Aikens RC, Chen JH, Baiocchi M, Simard JF. Feedback Loop Failure Modes in Medical Diagnosis: How Biases Can Emerge and Be Reinforced. Med Decis Making. 2024 May 13:10.1177/0272989X241248612. doi: 10.1177/0272989X241248612. Epub ahead of print. PMID: 38738479.
  • Ma SP, Rohatgi N, Chen JH. The promises and limitations of artificial intelligence for quality improvement, patient safety, and research in hospital medicine. J Hosp Med. 2024 May 15:10.1002/jhm.13404. doi: 10.1002/jhm.13404. Epub ahead of print. PMID: 38751246.
  • Go AS, Tan TC, Chertow GM, Ordonez JD, Fan D, Law D, Yankulin L, Wojcicki JM, Zheng S, Chen KK, Khoshniat-Rad F, Yang J, Parikh RV. Primary Nephrotic Syndrome and Risks of ESKD, Cardiovascular Events, and Death: The Kaiser Permanente Nephrotic Syndrome Study. J Am Soc Nephrol. 2021 Sep;32(9):2303-2314. doi: 10.1681/ASN.2020111583. Epub 2021 Jun 18. PMID: 34362836; PMCID: PMC8729848.
  • Ouyang D, Tisdale R, Cheng P, Chi J, Chen JH, Ashley E. What's in a Name? Factors That Influence the Usage of Generic Versus Trade Names for Cardiac Medications Among Healthcare Providers. Circ Cardiovasc Qual Outcomes. 2018 Aug;11(8):e004704. doi: 10.1161/CIRCOUTCOMES.118.004704. PMID: 30354370; PMCID: PMC6497068.
  • Iyer D, Zhao Q, Wirka R, Naravane A, Nguyen T, Liu B, Nagao M, Cheng P, Miller CL, Kim JB, Pjanic M, Quertermous T. Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk. PLoS Genet. 2018 Oct 11;14(10):e1007681. doi: 10.1371/journal.pgen.1007681. PMID: 30307970; PMCID: PMC6198989.
  • Zhao Q, Wirka R, Nguyen T, Nagao M, Cheng P, Miller CL, Kim JB, Pjanic M, Quertermous T. TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression. Genome Med. 2019 May 2;11(1):23. doi: 10.1186/s13073-019-0635-9. PMID: 31014396; PMCID: PMC6480881.
  • Nagao M, Lyu Q, Zhao Q, Wirka RC, Bagga J, Nguyen T, Cheng P, Kim JB, Pjanic M, Miano JM, Quertermous T. Coronary Disease-Associated Gene Inhibits Smooth Muscle Cell Differentiation by Blocking the Myocardin-Serum Response Factor Pathway. Circ Res. 2020 Feb 14;126(4):517-529. doi: 10.1161/CIRCRESAHA.119.315968. Epub 2019 Dec 9. PMID: 31815603; PMCID: PMC7274203.
  • Zhu H, Rhee JW, Cheng P, Waliany S, Chang A, Witteles RM, Maecker H, Davis MM, Nguyen PK, Wu SM. Cardiovascular Complications in Patients with COVID-19: Consequences of Viral Toxicities and Host Immune Response. Curr Cardiol Rep. 2020 Apr 21;22(5):32. doi: 10.1007/s11886-020-01292-3. PMID: 32318865; PMCID: PMC7171437.
  • Cheng P, Zhu H, Witteles RM, Wu JC, Quertermous T, Wu SM, Rhee JW. Cardiovascular Risks in Patients with COVID-19: Potential Mechanisms and Areas of Uncertainty. Curr Cardiol Rep. 2020 Apr 29;22(5):34. doi: 10.1007/s11886-020-01293-2. PMID: 32350632; PMCID: PMC7189178.
  • Zhu H, Rhee JW, Cheng P, Waliany S, Chang A, Witteles RM, Maecker H, Davis MM, Nguyen PK, Wu SM. Correction to: Cardiovascular Complications in Patients with COVID-19: Consequences of Viral Toxicities and Host Immune Response. Curr Cardiol Rep. 2020 May 13;22(5):36. doi: 10.1007/s11886-020-01302-4. PMID: 32405913; PMCID: PMC7220624.
  • Barrett CD, Alexander KM, Zhao H, Haddad F, Cheng P, Liao R, Wheeler MT, Liedtke M, Schrier S, Arai S, Weisshaar D, Witteles RM. Outcomes in Patients With Cardiac Amyloidosis Undergoing Heart Transplantation. JACC Heart Fail. 2020 Jun;8(6):461-468. doi: 10.1016/j.jchf.2019.12.013. Epub 2020 May 6. PMID: 32387068.
  • Zhao Q, Dacre M, Nguyen T, Pjanic M, Liu B, Iyer D, Cheng P, Wirka R, Kim JB, Fraser HB, Quertermous T. Molecular mechanisms of coronary disease revealed using quantitative trait loci for TCF21 binding, chromatin accessibility, and chromosomal looping. Genome Biol. 2020 Jun 8;21(1):135. doi: 10.1186/s13059-020-02049-5. PMID: 32513244; PMCID: PMC7278146.
  • Kim JB, Zhao Q, Nguyen T, Pjanic M, Cheng P, Wirka R, Travisano S, Nagao M, Kundu R, Quertermous T. Environment-Sensing Aryl Hydrocarbon Receptor Inhibits the Chondrogenic Fate of Modulated Smooth Muscle Cells in Atherosclerotic Lesions. Circulation. 2020 Aug 11;142(6):575-590. doi: 10.1161/CIRCULATIONAHA.120.045981. Epub 2020 May 22. PMID: 32441123; PMCID: PMC8066499.
  • Pedroza AJ, Tashima Y, Shad R, Cheng P, Wirka R, Churovich S, Nakamura K, Yokoyama N, Cui JZ, Iosef C, Hiesinger W, Quertermous T, Fischbein MP. Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm. Arterioscler Thromb Vasc Biol. 2020 Sep;40(9):2195-2211. doi: 10.1161/ATVBAHA.120.314670. Epub 2020 Jul 23. PMID: 32698686; PMCID: PMC7484233.
  • Kapoor R, Fazal M, Cheng P, Witteles R, Rhee JW, Baykaner T. Ibrutinib-associated atrial fibrillation treatment with catheter ablation. HeartRhythm Case Rep. 2021 Nov 15;7(11):713-716. doi: 10.1016/j.hrcr.2021.08.003. PMID: 34820264; PMCID: PMC8602082.
  • Fazal M, Kapoor R, Cheng P, Rogers AJ, Narayan SM, Wang P, Witteles RM, Perino AC, Baykaner T, Rhee JW. Arrhythmia Patterns in Patients on Ibrutinib. Front Cardiovasc Med. 2022 Jan 3;8:792310. doi: 10.3389/fcvm.2021.792310. PMID: 35047578; PMCID: PMC8761892.
  • Cheng P, Wirka RC, Shoa Clarke L, Zhao Q, Kundu R, Nguyen T, Nair S, Sharma D, Kim HJ, Shi H, Assimes T, Brian Kim J, Kundaje A, Quertermous T. Shapes the Epigenetic Landscape of Atherosclerosis. Circulation. 2022 Feb 8;145(6):469-485. doi: 10.1161/CIRCULATIONAHA.121.057789. Epub 2022 Jan 6. PMID: 34990206; PMCID: PMC8896308.
  • Locke FL, Miklos DB, Jacobson CA, Perales MA, Kersten MJ, Oluwole OO, Ghobadi A, Rapoport AP, McGuirk J, Pagel JM, Munoz J, Farooq U, van Meerten T, Reagan PM, Sureda A, Flinn IW, Vandenberghe P, Song KW, Dickinson M, Minnema MC, Riedell PA, Leslie LA, Chaganti S, Yang Y, Filosto S, Shah J, Schupp M, To C, Cheng P, et al. Axicabtagene Ciloleucel as Second-Line Therapy for Large B-Cell Lymphoma. N Engl J Med. 2022 Feb 17;386(7):640-654. doi: 10.1056/NEJMoa2116133. Epub 2021 Dec 11. PMID: 34891224.
  • Cheng P, Wirka RC, Kim JB, Kim HJ, Nguyen T, Kundu R, Zhao Q, Sharma D, Pedroza A, Nagao M, Iyer D, Fischbein MP, Quertermous T. Smad3 regulates smooth muscle cell fate and mediates adverse remodeling and calcification of the atherosclerotic plaque. Nat Cardiovasc Res. 2022 Apr;1(4):322-333. doi: 10.1038/s44161-022-00042-8. Epub 2022 Apr 13. PMID: 36246779; PMCID: PMC9560061.
  • Duffy G, Cheng PP, Yuan N, He B, Kwan AC, Shun-Shin MJ, Alexander KM, Ebinger J, Lungren MP, Rader F, Liang DH, Schnittger I, Ashley EA, Zou JY, Patel J, Witteles R, Ouyang D. High-Throughput Precision Phenotyping of Left Ventricular Hypertrophy With Cardiovascular Deep Learning. JAMA Cardiol. 2022 Apr 1;7(4):386-395. doi: 10.1001/jamacardio.2021.6059. PMID: 35195663; PMCID: PMC9008505.
  • Chowdhury RR, D'Addabbo J, Huang X, Veizades S, Sasagawa K, Louis DM, Cheng P, Sokol J, Jensen A, Tso A, Shankar V, Wendel BS, Bakerman I, Liang G, Koyano T, Fong R, Nau AN, Ahmad H, Gopakumar J, Wirka R, Lee AS, Boyd J, Woo YJ, Quertermous T, Gulati GS, Jaiswal S, Chien YH, Chan CKF, Davis MM, et al. Human Coronary Plaque T Cells Are Clonal and Cross-React to Virus and Self. Circ Res. 2022 May 13;130(10):1510-1530. doi: 10.1161/CIRCRESAHA.121.320090. Epub 2022 Apr 18. PMID: 35430876; PMCID: PMC9286288.
  • Chen H, Ouyang D, Baykaner T, Jamal F, Cheng P, Rhee JW. Artificial intelligence applications in cardio-oncology: Leveraging high dimensional cardiovascular data. Front Cardiovasc Med. 2022 Jul 26;9:941148. doi: 10.3389/fcvm.2022.941148. PMID: 35958422; PMCID: PMC9360492.
  • Steffes LC, Cheng P, Quertermous T, Kumar ME. von Willebrand Factor Is Produced Exclusively by Endothelium, Not Neointima, in Occlusive Vascular Lesions in Both Pulmonary Hypertension and Atherosclerosis. Circulation. 2022 Aug 2;146(5):429-431. doi: 10.1161/CIRCULATIONAHA.121.058427. Epub 2022 Aug 1. PMID: 35914017; PMCID: PMC9350908.
  • Pedroza AJ, Dalal AR, Shad R, Yokoyama N, Nakamura K, Cheng P, Wirka RC, Mitchel O, Baiocchi M, Hiesinger W, Quertermous T, Fischbein MP. Embryologic Origin Influences Smooth Muscle Cell Phenotypic Modulation Signatures in Murine Marfan Syndrome Aortic Aneurysm. Arterioscler Thromb Vasc Biol. 2022 Sep;42(9):1154-1168. doi: 10.1161/ATVBAHA.122.317381. Epub 2022 Jul 7. PMID: 35861960; PMCID: PMC9420801.
  • Chan A, Torelli S, Batchelder R, Waliany S, Neal J, Witteles R, Nguyen P, Cheng P, Zhu H. Immunotherapy-Associated Atherosclerosis: A Comprehensive Review of Recent Findings and Implications for Future Research. Curr Treat Options Cardiovasc Med. 2023 ;25(12):715-735. doi: 10.1007/s11936-023-01024-0. Epub 2023 Dec 15. PMID: 38213548; PMCID: PMC10776491.
  • Kim HJ, Cheng P, Travisano S, Weldy C, Monteiro JP, Kundu R, Nguyen T, Sharma D, Shi H, Lin Y, Liu B, Haldar S, Jackson S, Quertermous T. Molecular mechanisms of coronary artery disease risk at the locus. bioRxiv. 2023 Jan 27:10.1101/2023.01.26.525789. doi: 10.1101/2023.01.26.525789. PMID: 36747745; PMCID: PMC9900883.
  • Kim HJ, Cheng P, Travisano S, Weldy C, Monteiro JP, Kundu R, Nguyen T, Sharma D, Shi H, Lin Y, Liu B, Haldar S, Jackson S, Quertermous T. Molecular mechanisms of coronary artery disease risk at the PDGFD locus. Nat Commun. 2023 Feb 15;14(1):847. doi: 10.1038/s41467-023-36518-9. PMID: 36792607; PMCID: PMC9932166.
  • Shi H, Nguyen T, Zhao Q, Cheng P, Sharma D, Kim HJ, Brian Kim J, Wirka R, Weldy CS, Monteiro JP, Quertermous T. Discovery of Transacting Long Noncoding RNAs That Regulate Smooth Muscle Cell Phenotype. Circ Res. 2023 Mar 31;132(7):795-811. doi: 10.1161/CIRCRESAHA.122.321960. Epub 2023 Feb 28. PMID: 36852690; PMCID: PMC11056793.
  • Westin JR, Locke FL, Dickinson M, Ghobadi A, Elsawy M, van Meerten T, Miklos DB, Ulrickson ML, Perales MA, Farooq U, Wannesson L, Leslie L, Kersten MJ, Jacobson CA, Pagel JM, Wulf G, Johnston P, Rapoport AP, Du L, Vardhanabhuti S, Filosto S, Shah J, Snider JT, Cheng P, To C, Oluwole OO, Sureda A. Safety and Efficacy of Axicabtagene Ciloleucel versus Standard of Care in Patients 65 Years of Age or Older with Relapsed/Refractory Large B-Cell Lymphoma. Clin Cancer Res. 2023 May 15;29(10):1894-1905. doi: 10.1158/1078-0432.CCR-22-3136. PMID: 36999993; PMCID: PMC10183830.
  • Westin JR, Oluwole OO, Kersten MJ, Miklos DB, Perales MA, Ghobadi A, Rapoport AP, Sureda A, Jacobson CA, Farooq U, van Meerten T, Ulrickson M, Elsawy M, Leslie LA, Chaganti S, Dickinson M, Dorritie K, Reagan PM, McGuirk J, Song KW, Riedell PA, Minnema MC, Yang Y, Vardhanabhuti S, Filosto S, Cheng P, Shahani SA, Schupp M, To C, et al. Survival with Axicabtagene Ciloleucel in Large B-Cell Lymphoma. N Engl J Med. 2023 Jul 13;389(2):148-157. doi: 10.1056/NEJMoa2301665. Epub 2023 Jun 5. PMID: 37272527.
  • Fazal M, Wei C, Chuy KL, Hussain K, Gomez SE, Ba SS, Pietrasik G, Yadav N, Ghazizadeh Z, Kapoor R, Witteles RM, Blackmon A, Wang PJ, John RM, Narayan SM, Cheng P, Rhee JW, Baykaner T. Tyrosine kinase inhibitor-associated ventricular arrhythmias: a case series and review of literature. J Interv Card Electrophysiol. 2023 Aug;66(5):1165-1175. doi: 10.1007/s10840-022-01400-z. Epub 2022 Nov 21. PMID: 36411365; PMCID: PMC10199959.
  • Pedroza AJ, Cheng P, Dalal AR, Baeumler K, Kino A, Tognozzi E, Shad R, Yokoyama N, Nakamura K, Mitchel O, Hiesinger W, MacFarlane EG, Fleischmann D, Woo YJ, Quertermous T, Fischbein MP. Early clinical outcomes and molecular smooth muscle cell phenotyping using a prophylactic aortic arch replacement strategy in Loeys-Dietz syndrome. J Thorac Cardiovasc Surg. 2023 Nov;166(5):e332-e376. doi: 10.1016/j.jtcvs.2023.07.023. Epub 2023 Jul 25. PMID: 37500053.
  • Wei C, Fazal M, Loh A, Kapoor R, Gomez SE, Shah S, Rogers AJ, Narayan SM, Wang PJ, Witteles RM, Perino AC, Cheng P, Rhee JW, Baykaner T. Comparative arrhythmia patterns among patients on tyrosine kinase inhibitors. J Interv Card Electrophysiol. 2024 Jan;67(1):111-118. doi: 10.1007/s10840-023-01575-z. Epub 2023 May 31. PMID: 37256462; PMCID: PMC10851950.
  • Quertermous T, Li DY, Weldy CS, Ramste M, Sharma D, Monteiro JP, Gu W, Worssam MD, Palmisano BT, Park CY, Cheng P. Genome-Wide Genetic Associations Prioritize Evaluation of Causal Mechanisms of Atherosclerotic Disease Risk. Arterioscler Thromb Vasc Biol. 2024 Feb;44(2):323-327. doi: 10.1161/ATVBAHA.123.319480. Epub 2024 Jan 24. PMID: 38266112; PMCID: PMC10857784.
  • Sharma D, Worssam MD, Pedroza AJ, Dalal AR, Alemany H, Kim HJ, Kundu R, Fischbein MP, Cheng P, Wirka R, Quertermous T. Comprehensive Integration of Multiple Single-Cell Transcriptomic Data Sets Defines Distinct Cell Populations and Their Phenotypic Changes in Murine Atherosclerosis. Arterioscler Thromb Vasc Biol. 2024 Feb;44(2):391-408. doi: 10.1161/ATVBAHA.123.320030. Epub 2023 Dec 28. PMID: 38152886.
  • Moore A, Kane E, Wang Z, Panagiotou OA, Teras LR, Monnereau A, Wong Doo N, Machiela MJ, Skibola CF, Slager SL, Salles G, Camp NJ, Bracci PM, Nieters A, Vermeulen RCH, Vijai J, Smedby KE, Zhang Y, Vajdic CM, Cozen W, Spinelli JJ, Hjalgrim H, Giles GG, Link BK, Clavel J, Arslan AA, Purdue MP, Tinker LF, Albanes D,... Cox DG, et al. Genetically Determined Height and Risk of Non-hodgkin Lymphoma. Front Oncol. 2020 Jan 28;9:1539. doi: 10.3389/fonc.2019.01539. PMID: 32064237; PMCID: PMC6999122.
  • Schaffter T, Buist DSM, Lee CI, Nikulin Y, Ribli D, Guan Y, Lotter W, Jie Z, Du H, Wang S, Feng J, Feng M, Kim HE, Albiol F, Albiol A, Morrell S, Wojna Z, Ahsen ME, Asif U, Jimeno Yepes A, Yohanandan S, Rabinovici-Cohen S, Yi D, Hoff B, Yu T, Chaibub Neto E, Rubin DL, Lindholm P, Margolies LR,... Cox DD, et al. Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms. JAMA Netw Open. 2020 Mar 2;3(3):e200265. doi: 10.1001/jamanetworkopen.2020.0265. PMID: 32119094; PMCID: PMC7052735.
  • Shaw L, Kwong RY, Nagel E, Salerno M, Jaffer F, Blankstein R, Dilsizian V, Flachskampf F, Grayburn P, Leipsic J, Marwick T, Nieman K, Raman S, Sengupta P, Zoghbi W, Pellikka PA, Swaminathan M, Dorbala S, Thompson R, Al-Mallah M, Calnon D, Polk D, Soman P, Beanlands R, Garrett KN, Henry TD, Rao SV, Duffy PL, Cox D, et al. Cardiac Imaging in the Post-ISCHEMIA Trial Era: A Multisociety Viewpoint. JACC Cardiovasc Imaging. 2020 Aug;13(8):1815-1833. doi: 10.1016/j.jcmg.2020.05.001. PMID: 32762886.
  • Yong CM, Ang L, Welt FGP, Gummidipundi S, Henry TD, Pinto DS, Cox D, Wang P, Asch S, Mahmud E, Fearon WF. Cardiac procedural deferral during the coronavirus (COVID-19) pandemic. Catheter Cardiovasc Interv. 2020 Nov;96(5):1080-1086. doi: 10.1002/ccd.29262. Epub 2020 Sep 12. PMID: 32882075.
  • Moore A, Machiela MJ, Machado M, Wang SS, Kane E, Slager SL, Zhou W, Carrington M, Lan Q, Milne RL, Birmann BM, Adami HO, Albanes D, Arslan AA, Becker N, Benavente Y, Bisanzi S, Boffetta P, Bracci PM, Brennan P, Brooks-Wilson AR, Canzian F, Caporaso N, Clavel J, Cocco P, Conde L, Cox DG, Cozen W, Curtin K, et al. Genome-wide homozygosity and risk of four non-Hodgkin lymphoma subtypes. J Transl Genet Genom. 2021 ;5:200-217. doi: 10.20517/jtgg.2021.08. Epub 2021 Jun 17. PMID: 34622145; PMCID: PMC8494431.
  • Kern MJ, Cox D, Fearon W, Johnson N, Klein L, Krucoff M, Moses J, Naidu SS, Pinto D, Ramee S, Teirstein P, Yeung A. Is FFR dead? A conversation in cardiology. Catheter Cardiovasc Interv. 2022 Nov;100(6):1045-1050. doi: 10.1002/ccd.30422. Epub 2022 Oct 23. PMID: 36273434.
  • Berndt SI, Vijai J, Benavente Y, Camp NJ, Nieters A, Wang Z, Smedby KE, Kleinstern G, Hjalgrim H, Besson C, Skibola CF, Morton LM, Brooks-Wilson AR, Teras LR, Breeze C, Arias J, Adami HO, Albanes D, Anderson KC, Ansell SM, Bassig B, Becker N, Bhatti P, Birmann BM, Boffetta P, Bracci PM, Brennan P, Brown EE, Burdett L,... Cox DG, et al. Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes. Leukemia. 2022 Dec;36(12):2835-2844. doi: 10.1038/s41375-022-01711-0. Epub 2022 Oct 22. PMID: 36273105; PMCID: PMC10337695.
  • Glasscock CJ, Pecoraro R, McHugh R, Doyle LA, Chen W, Boivin O, Lonnquist B, Na E, Politanska Y, Haddox HK, Cox D, Norn C, Coventry B, Goreshnik I, Vafeados D, Lee GR, Gordan R, Stoddard BL, DiMaio F, Baker D. Computational design of sequence-specific DNA-binding proteins. bioRxiv. 2023 Sep 21:10.1101/2023.09.20.558720. doi: 10.1101/2023.09.20.558720. PMID: 37790440; PMCID: PMC10542524.
  • Berndt SI, Vijai J, Benavente Y, Camp NJ, Nieters A, Wang Z, Smedby KE, Kleinstern G, Hjalgrim H, Besson C, Skibola CF, Morton LM, Brooks-Wilson AR, Teras LR, Breeze C, Arias J, Adami HO, Albanes D, Anderson KC, Ansell SM, Bassig B, Becker N, Bhatti P, Birmann BM, Boffetta P, Bracci PM, Brennan P, Brown EE, Burdett L,... Cox DG, et al. Correction: Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes. Leukemia. 2023 Oct;37(10):2142. doi: 10.1038/s41375-023-01978-x. PMID: 37666943.
  • He S, Huang R, Townley J, Kretsch RC, Karagianes TG, Cox DBT, Blair H, Penzar D, Vyaltsev V, Aristova E, Zinkevich A, Bakulin A, Sohn H, Krstevski D, Fukui T, Tatematsu F, Uchida Y, Jang D, Lee JS, Shieh R, Ma T, Martynov E, Shugaev MV, Bukhari HST, Fujikawa K, Onodera K, Henkel C, Ron S, Romano J, et al. Ribonanza: deep learning of RNA structure through dual crowdsourcing. bioRxiv. 2024 Feb 27:10.1101/2024.02.24.581671. doi: 10.1101/2024.02.24.581671. PMID: 38464325; PMCID: PMC10925082.