• Lembke A, Chen JH. Use of Opioid Agonist Therapy for Medicare Patients in 2013. JAMA Psychiatry. 2016 Sep 1;73(9):990-2. doi: 10.1001/jamapsychiatry.2016.1390. PMID: 27438334; PMCID: PMC5526587.
• Leung TI, Goldstein MK, Musen MA, Cronkite R, Chen JH, Gottlieb A, Leitersdorf E. The New HIT: Human Health Information Technology. Stud Health Technol Inform. 2017;245:768-772. PMID: 29295202.
• Chen JH, Goldstein MK, Asch SM, Mackey L, Altman RB. Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets. J Am Med Inform Assoc. 2017 May 1;24(3):472-480. doi: 10.1093/jamia/ocw136. PMID: 27655861; PMCID: PMC5391730.
• Chen JH, Alagappan M, Goldstein MK, Asch SM, Altman RB. Decaying relevance of clinical data towards future decisions in data-driven inpatient clinical order sets. Int J Med Inform. 2017 Jun;102:71-79. doi: 10.1016/j.ijmedinf.2017.03.006. Epub 2017 Mar 18. PMID: 28495350; PMCID: PMC5459355.
• Chen JH, Asch SM. Machine Learning and Prediction in Medicine - Beyond the Peak of Inflated Expectations. N Engl J Med. 2017 Jun 29;376(26):2507-2509. doi: 10.1056/NEJMp1702071. PMID: 28657867; PMCID: PMC5953825.
• Chavez G, Richman IB, Kaimal R, Bentley J, Yasukawa LA, Altman RB, Periyakoil VS, Chen JH. Reversals and limitations on high-intensity, life-sustaining treatments. PLoS One. 2018 Feb 28;13(2):e0190569. doi: 10.1371/journal.pone.0190569. PMID: 29489814; PMCID: PMC5830043.
• Li RC, Garg T, Cun T, Shieh L, Krishnan G, Fang D, Chen JH. Impact of problem-based charting on the utilization and accuracy of the electronic problem list. J Am Med Inform Assoc. 2018 May 1;25(5):548-554. doi: 10.1093/jamia/ocx154. PMID: 29360995; PMCID: PMC6018915.
• Marafino BJ, Dudley RA, Shah NH, Chen JH. Accurate and interpretable intensive care risk adjustment for fused clinical data with generalized additive models. AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:166-175. PMID: 29888065; PMCID: PMC5961794.
• Roy SK, Hom J, Mackey L, Shah N, Chen JH. Predicting Low Information Laboratory Diagnostic Tests. AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:217-226. PMID: 29888076; PMCID: PMC5961775.
• Wang JK, Schuler A, Shah NH, Baiocchi MTM, Chen JH. Inpatient Clinical Order Patterns Machine-Learned From Teaching Versus Attending-Only Medical Services. AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:226-235. PMID: 29888077; PMCID: PMC5961816.
• Ouyang D, Tisdale R, Ashley E, Chi J, Chen JH. Acetaminophen or Tylenol? A Retrospective Analysis of Medication Digital Communication Practices. J Gen Intern Med. 2018 Aug;33(8):1218-1220. doi: 10.1007/s11606-018-4455-1. PMID: 29717410; PMCID: PMC6082214.
• Ouyang D, Tisdale R, Cheng P, Chi J, Chen JH, Ashley E. What's in a Name? Factors That Influence the Usage of Generic Versus Trade Names for Cardiac Medications Among Healthcare Providers. Circ Cardiovasc Qual Outcomes. 2018 Aug;11(8):e004704. doi: 10.1161/CIRCOUTCOMES.118.004704. PMID: 30354370; PMCID: PMC6497068.
• Wang JK, Hom J, Balasubramanian S, Schuler A, Shah NH, Goldstein MK, Baiocchi MTM, Chen JH. An evaluation of clinical order patterns machine-learned from clinician cohorts stratified by patient mortality outcomes. J Biomed Inform. 2018 Oct;86:109-119. doi: 10.1016/j.jbi.2018.09.005. Epub 2018 Sep 7. PMID: 30195660; PMCID: PMC6250126.
• Wang JK, Hom J, Balasubramanian S, Chen JH. Association model data learned from clinicians stratified by patient mortality outcomes at a Tertiary Academic Center. Data Brief. 2018 Nov 2;21:1669-1673. doi: 10.1016/j.dib.2018.10.163. PMID: 30505898; PMCID: PMC6247447.
• Smeraglio A, Heidenreich PA, Krishnan G, Hopkins J, Chen J, Shieh L. Patient vs provider perspectives of 30-day hospital readmissions. BMJ Open Qual. 2019 Jan 7;8(1):e000264. doi: 10.1136/bmjoq-2017-000264. PMID: 30687798; PMCID: PMC6327873.
• Wang JK, Ouyang D, Hom J, Chi J, Chen JH. Characterizing electronic health record usage patterns of inpatient medicine residents using event log data. PLoS One. 2019 Feb 6;14(2):e0205379. doi: 10.1371/journal.pone.0205379. PMID: 30726208; PMCID: PMC6364867.
• Wang JX, Sullivan DK, Wells AJ, Wells AC, Chen JH. Neural Networks for Clinical Order Decision Support. AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:315-324. PMID: 31258984; PMCID: PMC6568109.
• Aikens RC, Balasubramanian S, Chen JH. A Machine Learning Approach to Predicting the Stability of Inpatient Lab Test Results. AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:515-523. PMID: 31259006; PMCID: PMC6568078.
• Kockel L, Griffin C, Ahmed Y, Fidelak L, Rajan A, Gould EP, Haigney M, Ralston B, Tercek RJ, Galligani L, Rao S, Huq L, Bhargava HK, Dooner AC, Lemmerman EG, Malusa RF, Nguyen TH, Chung JS, Gregory SM, Kuwana KM, Regenold JT, Wei A, Ashton J, Dickinson P, Martel K, Cai C, Price S, Qiao J, Shepley D,... Chen J, et al. An Interscholastic Network To Generate LexA Enhancer Trap Lines in . G3 (Bethesda). 2019 Jul 9;9(7):2097-2106. doi: 10.1534/g3.119.400105. PMID: 31040111; PMCID: PMC6643891.
• Banerjee I, Sofela M, Yang J, Chen JH, Shah NH, Ball R, Mushlin AI, Desai M, Bledsoe J, Amrhein T, Rubin DL, Zamanian R, Lungren MP. Development and Performance of the Pulmonary Embolism Result Forecast Model (PERFORM) for Computed Tomography Clinical Decision Support. JAMA Netw Open. 2019 Aug 2;2(8):e198719. doi: 10.1001/jamanetworkopen.2019.8719. PMID: 31390040; PMCID: PMC6686780.
• Chi J, Bentley J, Kugler J, Chen JH. How are medical students using the Electronic Health Record (EHR)?: An analysis of EHR use on an inpatient medicine rotation. PLoS One. 2019 Aug 16;14(8):e0221300. doi: 10.1371/journal.pone.0221300. PMID: 31419265; PMCID: PMC6697335.
• Xu S, Hom J, Balasubramanian S, Schroeder LF, Najafi N, Roy S, Chen JH. Prevalence and Predictability of Low-Yield Inpatient Laboratory Diagnostic Tests. JAMA Netw Open. 2019 Sep 4;2(9):e1910967. doi: 10.1001/jamanetworkopen.2019.10967. PMID: 31509205; PMCID: PMC6739729.
• Li RC, Wang JK, Sharp C, Chen JH. When order sets do not align with clinician workflow: assessing practice patterns in the electronic health record. BMJ Qual Saf. 2019 Dec;28(12):987-996. doi: 10.1136/bmjqs-2018-008968. Epub 2019 Jun 4. PMID: 31164486; PMCID: PMC6868292.
• Fohner AE, Greene JD, Lawson BL, Chen JH, Kipnis P, Escobar GJ, Liu VX. Assessing clinical heterogeneity in sepsis through treatment patterns and machine learning. J Am Med Inform Assoc. 2019 Dec 1;26(12):1466-1477. doi: 10.1093/jamia/ocz106. PMID: 31314892; PMCID: PMC7647146.
• Ghorbani A, Ouyang D, Abid A, He B, Chen JH, Harrington RA, Liang DH, Ashley EA, Zou JY. Deep learning interpretation of echocardiograms. NPJ Digit Med. 2020 Jan 24;3:10. doi: 10.1038/s41746-019-0216-8. PMID: 31993508; PMCID: PMC6981156.
• Corbin CK, Medford RJ, Osei K, Chen JH. Personalized Antibiograms: Machine Learning for Precision Selection of Empiric Antibiotics. AMIA Jt Summits Transl Sci Proc. 2020 May 30;2020:108-115. PMID: 32477629; PMCID: PMC7233062.
• Chiang J, Kumar A, Morales D, Saini D, Hom J, Shieh L, Musen M, Goldstein MK, Chen JH. Physician Usage and Acceptance of a Machine Learning Recommender System for Simulated Clinical Order Entry. AMIA Jt Summits Transl Sci Proc. 2020 May 30;2020:89-97. PMID: 32477627; PMCID: PMC7233080.
• Callahan A, Shah NH, Chen JH. Research and Reporting Considerations for Observational Studies Using Electronic Health Record Data. Ann Intern Med. 2020 Jun 2;172(11 Suppl):S79-S84. doi: 10.7326/M19-0873. PMID: 32479175; PMCID: PMC7413106.
• Wang JX, Sullivan DK, Wells AC, Chen JH. ClinicNet: machine learning for personalized clinical order set recommendations. JAMIA Open. 2020 Jun 28;3(2):216-224. doi: 10.1093/jamiaopen/ooaa021. PMID: 32734162; PMCID: PMC7382624.
• Payrovnaziri SN, Rengifo-Moreno P, Miller T, Bian J, Chen JH, Liu X, He Z. Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review. J Am Med Inform Assoc. 2020 Jul 1;27(7):1173-1185. doi: 10.1093/jamia/ocaa053. PMID: 32417928; PMCID: PMC7647281.
• Jankovic I, Chen JH. Clinical Decision Support and Implications for the Clinician Burnout Crisis. Yearb Med Inform. 2020 Aug;29(1):145-154. doi: 10.1055/s-0040-1701986. Epub 2020 Aug 21. PMID: 32823308; PMCID: PMC7442505.
• Li RC, Chen JH. Web Exclusive. Annals for Hospitalists Inpatient Notes - Realizing the Promises of Hospital Electronic Order Sets. Ann Intern Med. 2020 Aug 18;173(4):HO2-HO3. doi: 10.7326/M20-5164. PMID: 32805161; PMCID: PMC7893644.
• Chen JH, Verghese A. Planning for the Known Unknown: Machine Learning for Human Healthcare Systems. Am J Bioeth. 2020 Nov;20(11):1-3. doi: 10.1080/15265161.2020.1822674. PMID: 33103968.
• Ramezanpour A, Beam AL, Chen JH, Mashaghi A. Statistical Physics for Medical Diagnostics: Learning, Inference, and Optimization Algorithms. Diagnostics (Basel). 2020 Nov 19;10(11):10.3390/diagnostics10110972. doi: 10.3390/diagnostics10110972. PMID: 33228143; PMCID: PMC7699346.
• Kumar A, Aikens RC, Hom J, Shieh L, Chiang J, Morales D, Saini D, Musen M, Baiocchi M, Altman R, Goldstein MK, Asch S, Chen JH. OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases. J Am Med Inform Assoc. 2020 Dec 9;27(12):1850-1859. doi: 10.1093/jamia/ocaa190. PMID: 33106874; PMCID: PMC7727352.
• Noshad M, Rose CC, Thombley R, Chiang J, Corbin CK, Nguyen M, Liu VX, Adler-Milstein J, Chen JH. Context is Key: Using the Audit Log to Capture Contextual Factors Affecting Stroke Care Processes. AMIA Annu Symp Proc. 2021 Jan 25;2020:953-962. PMID: 33936471; PMCID: PMC8075425.
• Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe A, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juarez YH, Phillips D, Bloom-Ackerman Z, Barkas N, Ganna A, Gomez J, Normandin E, Naderi P, Popov YV, Raju SS, Niezen S, Tsai LT, Siddle KJ, Sud M, Tran VM,... Chen J, et al. A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2. bioRxiv. 2021 Feb 25:10.1101/2021.02.25.430130. doi: 10.1101/2021.02.25.430130. PMID: 33655247; PMCID: PMC7924267.
• Punn R, Collins RT, Chen JH, Stauffer KJ, Wang R, Alexander S, MacMillen Lechich K, Murphy DJ, Chung S, Selamet Tierney ES. Tele-Clinic Visits in Pediatric Patients with Marfan Syndrome Using Parentally Acquired Echocardiography. J Pediatr. 2021 May;232:140-146. doi: 10.1016/j.jpeds.2021.01.004. Epub 2021 Jan 13. PMID: 33453199.
• Aikens RC, Rigdon J, Lee J, Baiocchi M, Goldstone AB, Chiu P, Woo YJ, Chen JH. stratamatch: Prognostic Score Stratification Using a Pilot Design. R J. 2021 Jun;13(1):614-630. doi: 10.32614/RJ-2021-063. PMID: 35821911; PMCID: PMC9273035.
• Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe Å, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juarez YH, Phillips D, Biermann J, Bloom-Ackermann Z, Barkas N, Ganna A, Gomez J, Melms JC, Katsyv I, Normandin E, Naderi P, Popov YV, Raju SS, Niezen S, Tsai LT,... Chen J, et al. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. 2021 Jul;595(7865):107-113. doi: 10.1038/s41586-021-03570-8. Epub 2021 Apr 29. PMID: 33915569; PMCID: PMC8919505.
• Ip W, Yang S, Parker J, Powell A, Xie J, Morse K, Aikens RC, Lee J, Gill M, Vundavalli S, Huang Y, Huang J, Chen JH, Hoffman J, Kuelbs C, Pageler N. Assessment of Prevalence of Adolescent Patient Portal Account Access by Guardians. JAMA Netw Open. 2021 Sep 1;4(9):e2124733. doi: 10.1001/jamanetworkopen.2021.24733. PMID: 34529064; PMCID: PMC8446820.
• Wang JX, Somani S, Chen JH, Murray S, Sarkar U. Health Equity in Artificial Intelligence and Primary Care Research: Protocol for a Scoping Review. JMIR Res Protoc. 2021 Sep 17;10(9):e27799. doi: 10.2196/27799. PMID: 34533458; PMCID: PMC8486995.
• Nguyen M, Jankovic I, Kalesinskas L, Baiocchi M, Chen JH. Machine learning for initial insulin estimation in hospitalized patients. J Am Med Inform Assoc. 2021 Sep 18;28(10):2212-2219. doi: 10.1093/jamia/ocab099. PMID: 34279615; PMCID: PMC8449602.
• Shenson JA, Jankovic I, Hong HJ, Weia B, White L, Chen JH, Eisenberg M. Engaging Housestaff as Informatics Collaborators: Educational and Operational Opportunities. Appl Clin Inform. 2021 Oct;12(5):1150-1156. doi: 10.1055/s-0041-1740258. Epub 2021 Dec 8. PMID: 34879406; PMCID: PMC8654580.
• Nguyen M, Corbin CK, Eulalio T, Ostberg NP, Machiraju G, Marafino BJ, Baiocchi M, Rose C, Chen JH. Developing machine learning models to personalize care levels among emergency room patients for hospital admission. J Am Med Inform Assoc. 2021 Oct 12;28(11):2423-2432. doi: 10.1093/jamia/ocab118. PMID: 34402507; PMCID: PMC8510323.
• Hughes JW, Yuan N, He B, Ouyang J, Ebinger J, Botting P, Lee J, Theurer J, Tooley JE, Nieman K, Lungren MP, Liang DH, Schnittger I, Chen JH, Ashley EA, Cheng S, Ouyang D, Zou JY. Deep learning evaluation of biomarkers from echocardiogram videos. EBioMedicine. 2021 Nov;73:103613. doi: 10.1016/j.ebiom.2021.103613. Epub 2021 Oct 14. PMID: 34656880; PMCID: PMC8524103.
• Adler-Milstein J, Chen JH, Dhaliwal G. Next-Generation Artificial Intelligence for Diagnosis: From Predicting Diagnostic Labels to "Wayfinding". JAMA. 2021 Dec 28;326(24):2467-2468. doi: 10.1001/jama.2021.22396. PMID: 34882190.
• Daneshjou R, Brenner SE, Chen JH, Crawford DC, Finlayson SG, Kidziński Ł, Bulyk ML. Precision Medicine: Using Artificial Intelligence to Improve Diagnostics and Healthcare. Pac Symp Biocomput. 2022;27:223-230. PMID: 34890151.
• Noshad M, Jankovic I, Chen JH. Clinical Recommender Algorithms to Simulate Digital Specialty Consultations. Pac Symp Biocomput. 2022;27:290-300. PMID: 34890157.
• Humphreys K, Shover CL, Andrews CM, Bohnert ASB, Brandeau ML, Caulkins JP, Chen JH, Cuellar MF, Hurd YL, Juurlink DN, Koh HK, Krebs EE, Lembke A, Mackey SC, Larrimore Ouellette L, Suffoletto B, Timko C. Responding to the opioid crisis in North America and beyond: recommendations of the Stanford-Lancet Commission. Lancet. 2022 Feb 5;399(10324):555-604. doi: 10.1016/S0140-6736(21)02252-2. Epub 2022 Feb 2. PMID: 35122753; PMCID: PMC9261968.